Gene features

Distribution of K values

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Distribution of isoform lengths

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Distribution of numbers of exons

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Distribution of numbers of isoforms

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Methods Legend

Method name Color
lr
sr

Estimation error

Method Normalized Root Mean Square Error Median Relative Difference Mean Abundance Recovery Rate Spearman's rho
lr 0.004 0.112 92.0% 0.924
sr 0.029 0.429 45.4% 0.746

Estimation Error for different conditions

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Histogram of Abundance Recovery Rate

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Correlation of estimated abundance and ground truth

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Correlation Boxplot of estimated abundance and ground truth

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Resolution Entropy

Method Resolution Entropy
lr 0.001
sr 0.001

Resolution Entropy for different conditions

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Consistency

Method Consistency Measure
lr 0.851
sr 0.924
*Consistency Measure (CM) is calculated for C threshold = 1

Consistency Measure curve

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Reproducibility

Method Reproducibility Measure
lr 0.372
sr 0.316
*Reproducibility Measure (RM) is calculated by the L2 norm of the standard deviation

Standard deviation vs estimated abundance curve

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Fold change based evaluation

Method Precision Recall Accuracy F1 Score AUC
lr 0.889 0.889 0.889 0.889 0.889
sr 0.774 0.774 0.774 0.774 0.774

ROC curves for performance of quantification

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PR curves for performance of quantification

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Split Statistics

Statistics with different K values

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Statistics with different isoform lengths

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Statistics with different numbers of exons

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Statistics with different numbers of isoforms

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Statistics with different expression level

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